Computational Biology Courses and Certifications

Fields Institute

Agent-Based Modeling of Cancer Cell Migration in Response to Tumor Microenvironmental Signals

Explore computational modeling techniques for simulating cancer cell migration and interactions within tumor microenvironments, enhancing understanding of disease progression.

• YouTube
• 25 minutes
• On-Demand
• Free Video

Fields Institute

Computational Modeling of Tumor Microenvironment: A Cancer Hallmarks Perspective

Explore computational modeling of tumor microenvironments through cancer hallmarks, gaining insights into advanced oncology research techniques and their applications.

• YouTube
• 1 hour 1 minute
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Computational Methods of Structural Bioinformatics in Studies of Protein-Nucleic Recognition

Explore computational methods in structural bioinformatics, focusing on protein-nucleic recognition mechanisms and their applications in DNA physics through advanced analytical approaches.

• YouTube
• 1 hour 11 minutes
• On-Demand
• Free Video

Labroots

Developing Disease Insights with Genotype-Specific Regulatory Networks

Explore a new method for estimating genetic variant effects on transcription factor regulatory events, integrating diverse omics data to build interpretable regulatory networks for disease insights.

• YouTube
• 28 minutes
• On-Demand
• Free Video

Labroots

Systematic Characterization of Gene Regulatory Networks Rewiring Patterns Mediated by Non-Coding Regions

Explore gene regulatory network rewiring patterns through innovative experimental methods and computational approaches for characterizing effects of perturbations at single-cell level.

• YouTube
• 19 minutes
• On-Demand
• Free Video

Center for Physical Genomics and Engineering

Modeling of Nucleosome Clustering in Euchromatin Resulting from Reader Protein Interactions

Explore nucleosome clustering in euchromatin through modeling interactions between reader proteins. Gain insights into chromosomal organization and dynamics from the Spakowitz lab's research.

• YouTube
• 25 minutes
• On-Demand
• Free Video

International Centre for Theoretical Sciences

Coarse-grained Simulations of Nucleosomes

Explore coarse-grained simulations of nucleosomes to understand chromatin organization and gene regulation through interdisciplinary computational modeling techniques.

• YouTube
• 17 minutes
• On-Demand
• Free Video

Broad Institute

GRN-Guided Simulation of Single-Cell RNA-Seq and Primer on Causal GANs

Explore GRouNdGAN for simulating single-cell RNA-seq data and learn about CausalGANs for gene regulatory network analysis and in-silico perturbation experiments.

• YouTube
• 1 hour 18 minutes
• On-Demand
• Free Video

Broad Institute

Beyond Cells: The Importance of Gene Programs and Tissue Context

Explore gene programs and tissue context beyond individual cells, uncovering novel insights into pressing biomedical questions through advanced machine learning techniques.

• YouTube
• 1 hour 7 minutes
• On-Demand
• Free Video

Broad Institute

High-Throughput In Silico Genetic Screen for 3D Genome Organization - Models, Inference and Algorithms

Explore cutting-edge approaches in 3D genome organization research, including in silico genetic screening and graph representation learning for analyzing multiscale chromatin structure.

• YouTube
• 1 hour 50 minutes
• On-Demand
• Free Video

Broad Institute

Learning Differentiation Dynamics from Lineage Tracing Datasets

Uncover robust computational approaches for inferring cell dynamics from single-cell transcriptomics integrated with lineage tracing, focusing on the CoSpar method and its applications in hematopoiesis and reprogramming.

• YouTube
• 54 minutes
• On-Demand
• Free Video

Broad Institute

Neural Optimal Transport for Inferring Single-Cell Responses to Perturbations

Explore neural optimal transport methods for predicting single-cell responses to perturbations, uncovering insights into molecular processes and treatment outcomes at unprecedented resolution.

• YouTube
• 1 hour 51 minutes
• On-Demand
• Free Video

Manolis Kellis

Evolution in Machine Learning and Computational Biology - Lecture 21

Dive into computational approaches for studying evolutionary biology, exploring genomic patterns, molecular evolution, and machine learning applications in evolutionary analysis.

• YouTube
• 1 hour 34 minutes
• On-Demand
• Free Video

Labroots

Why Networks Matter: Embracing Biological Complexity

Explore how genetic regulatory networks provide insights into health, disease, and potential therapies through examples from large-scale genomic datasets.

• YouTube
• 29 minutes
• On-Demand
• Free Video

Computational Genomics Summer Institute CGSI

Introduction to mRNA Design - CGSI 2024

Discover the fundamentals of mRNA design through computational approaches, exploring optimization algorithms, stability analysis, and practical applications in modern biotechnology and vaccine development.

• YouTube
• 34 minutes
• On-Demand
• Free Video