Computational Genomics Summer Institute CGSI Courses

Variational Inference for Fun and Profit

Discover the fundamentals of variational inference in statistical analysis, exploring Bayesian techniques, SuSiE PCA methodology, and practical applications in computational genomics and regression modeling.

• YouTube
• 35 minutes
• On-Demand
• Free Video

ML-Enabled Genetic Association Studies of High-Content Phenotypes

Explore cutting-edge machine learning applications in genetic association studies, focusing on high-content phenotypes and innovative frameworks like HistoGWAS for analyzing tissue phenotypes in histology cohorts.

• YouTube
• 24 minutes
• On-Demand
• Free Video

Promises and Pitfalls of Scaling in Population Genetic Simulations

Explore the complexities of population genetic simulations, focusing on scaling methodologies, their potential benefits, and inherent limitations in computational genomics research.

• YouTube
• 38 minutes
• On-Demand
• Free Video

Harnessing Computational Genomics for Predicting Viral Evolution

Discover cutting-edge computational methods for predicting viral evolution patterns, focusing on genomic analysis techniques and emerging variant detection through network-based approaches and mutational studies.

• YouTube
• 35 minutes
• On-Demand
• Free Video

Epigenomics Data Analysis - A Tutorial

Master essential techniques for analyzing epigenomics data, including ChIP-Seq analysis, histone modification clustering, and transcriptome integration methods for genomic research.

• YouTube
• 35 minutes
• On-Demand
• Free Video

Information Retrieval in the Era of Large Language Models

Explore how large language models are transforming information retrieval systems, with focus on event detection, clinical data extraction, and social media analysis for epidemic prediction.

• YouTube
• 35 minutes
• On-Demand
• Free Video

Spatial Modeling of Single-Cell Data Using Deep Learning

Explore deep learning approaches for spatial modeling of single-cell data, focusing on Hi-C reads imputation and transcriptomic data prediction through graph-based methodologies.

• YouTube
• 30 minutes
• On-Demand
• Free Video

Introduction to mRNA Design - CGSI 2024

Discover the fundamentals of mRNA design through computational approaches, exploring optimization algorithms, stability analysis, and practical applications in modern biotechnology and vaccine development.

• YouTube
• 34 minutes
• On-Demand
• Free Video

Phylogenomic Tree Estimation Tutorial - CGSI 2024

Discover advanced techniques for phylogenomic tree estimation, including ASTRAL, DISCO, and QR-STAR methodologies for species tree inference and branch length estimation in computational genomics.

• YouTube
• 42 minutes
• On-Demand
• Free Video

Constraints on Tumor Development

Explore genetic intra-tumor heterogeneity and evolutionary patterns across thousands of cancer genomes, examining key constraints in tumor development and progression.

• YouTube
• 40 minutes
• On-Demand
• Free Video

Using Biobanks to Study People That Are Not in It - CGSI 2024

Discover innovative approaches to extend biobank research benefits beyond direct participants, exploring methodologies for broader population health insights and applications.

• YouTube
• 33 minutes
• On-Demand
• Free Video

Psychiatric Phenotyping from EHR - Yes, We Can!

Discover how to leverage Electronic Health Records (EHR) for psychiatric phenotyping, exploring innovative computational methods and applications in mental health research.

• YouTube
• 30 minutes
• On-Demand
• Free Video

Uni-alignment: A Parameter-free Framework for Fast and Accurate Sequence Alignment

Discover a parameter-free framework for fast sequence alignment through UniAligner, exploring innovative approaches to computational genomics and bioinformatics analysis.

• YouTube
• 47 minutes
• On-Demand
• Free Video

Reconstructing Every Haplotype with De Novo Assembly

Discover advanced techniques for haplotype-resolved de novo genome assembly, focusing on phased assembly graphs and innovative methods for diploid and polyploid genome reconstruction.

• YouTube
• 29 minutes
• On-Demand
• Free Video

Genotype Representation Graph: Enabling Efficient Analysis of Biobank-Scale Data

Dive into efficient analysis of biobank-scale data using Genotype Representation Graphs. Explore innovative methods for estimating coalescence times and inferring whole-genome histories in large population datasets.

• YouTube
• 29 minutes
• On-Demand
• Free Video