Bioinformagician Courses

WGS Variant Calling - Variant Calling with GATK - Part 1 - Detailed NGS Analysis Workflow

1 review

Detailed tutorial on variant calling from WGS data using GATK best practices, covering quality control, alignment, duplicate marking, base recalibration, and variant discovery with HaplotypeCaller.

• YouTube
• 48 minutes
• On-Demand
• Free Video

Understanding File Formats in Bioinformatics - VCF and gVCF

1 review

Comprehensive guide to VCF and gVCF file formats in bioinformatics, covering structure, interpretation, and key concepts like genotypes, alleles, and variant recording for genomic analysis.

• YouTube
• 26 minutes
• On-Demand
• Free Video

WGS Variant Calling - Variant Filtering and Annotation - Part 2 - Detailed NGS Analysis Workflow

Detailed tutorial on filtering and annotating genetic variants using GATK tools. Covers hard filtering, genotype refinement, and Funcotator for comprehensive variant analysis in bioinformatics workflows.

• YouTube
• 43 minutes
• On-Demand
• Free Video

Weighted Gene Co-expression Network Analysis - Step-by-Step Tutorial - Part 1

Learn step-by-step Weighted Gene Co-expression Network Analysis (WGCNA) for RNA-Seq data, covering data manipulation, outlier detection, normalization, module identification, and visualization techniques.

• YouTube
• 36 minutes
• On-Demand
• Free Video

Single-Cell Trajectory Analysis Using Monocle3 and Seurat - Step-by-Step Tutorial

Step-by-step tutorial on single-cell trajectory analysis using Monocle3 and Seurat. Covers theory, workflow, and practical implementation in R, including data processing, visualization, and gene expression analysis along trajectories.

• YouTube
• 49 minutes
• On-Demand
• Free Video

Setup RNA-Seq Pipeline From Scratch - Fastq to Counts - Step-by-Step Tutorial

Step-by-step tutorial on processing RNA-Seq data: quality control, trimming, alignment, and quantification. Covers tools like FastQC, Trimmomatic, HISAT2, and featureCounts, with comparisons of aligners and best practices.

• YouTube
• 32 minutes
• On-Demand
• Free Video

Bioinformatics and Computational Biology - The Present Gateway to Research

Comprehensive overview of bioinformatics and computational biology, covering research fields, career paths, applications, job prospects, and educational opportunities for aspiring professionals in this cutting-edge domain.

• YouTube
• 1 hour 2 minutes
• On-Demand
• Free Video

Pseudo-Bulk Analysis for Single-Cell RNA-Seq Data - Detailed Workflow Tutorial

Comprehensive tutorial on pseudo-bulk analysis for single-cell RNA-Seq data, covering the what, why, and how. Includes data manipulation, aggregation, and differential expression analysis using R, Seurat, and DESeq2.

• YouTube
• 36 minutes
• On-Demand
• Free Video

Find Markers and Cluster Identification in Single-Cell RNA-Seq Using Seurat - Workflow Tutorial

Comprehensive tutorial on identifying cell markers in single-cell RNA-Seq data using Seurat, covering various marker identification methods, data visualization, and cluster annotation techniques.

• YouTube
• 34 minutes
• On-Demand
• Free Video

Integrate Single-Cell RNA-Seq Datasets in R Using Seurat - Detailed Seurat Workflow Tutorial

Comprehensive tutorial on integrating single-cell RNA-Seq datasets using Seurat in R, covering data merging, batch effect correction, and visualization techniques for improved analysis.

• YouTube
• 34 minutes
• On-Demand
• Free Video

DESeq2 Basics Explained - Differential Gene Expression Analysis - Bioinformatics 101

Comprehensive guide to DESeq2 for differential gene expression analysis in RNA-seq data, covering statistical models, normalization methods, and key steps in the analysis pipeline.

• YouTube
• 26 minutes
• On-Demand
• Free Video

How to Analyze Single-Cell RNA-Seq Data in R - Detailed Seurat Workflow Tutorial

Comprehensive tutorial on analyzing single-cell RNA-Seq data using Seurat in R, covering data processing, quality control, normalization, dimensionality reduction, and clustering for genomics research.

• YouTube
• 36 minutes
• On-Demand
• Free Video

Visualize Gene Expression Data in R Using Ggplot2 - Bioinformatics for Beginners

Learn to visualize gene expression data using R and ggplot2. Create barplots, density plots, boxplots, scatterplots, and heatmaps from RNA-Seq data. Hands-on tutorial for beginners in bioinformatics.

• YouTube
• 37 minutes
• On-Demand
• Free Video

How to Manipulate Gene Expression Data from NCBI GEO in R Using Dplyr - Bioinformatics for Beginners

Learn to manipulate gene expression data from NCBI GEO using R and dplyr. Covers data reading, metadata retrieval, and essential dplyr functions for effective bioinformatics analysis.

• YouTube
• 34 minutes
• On-Demand
• Free Video

Elucidata's Bulk RNA-Seq OmixAtlas - Effortless Dataset Discovery and Retrieval

Explore Elucidata's Polly platform for effortless RNA-Seq dataset discovery, featuring intuitive search, metadata exploration, visual analysis, and easy downloads. Overcome common challenges in accessing public genomic data.

• YouTube
• 28 minutes
• On-Demand
• Free Video