Understanding File Formats in Bioinformatics - VCF and gVCF

Understanding File Formats in Bioinformatics - VCF and gVCF

bioinformagician via YouTube Direct link

Intro

1 of 13

1 of 13

Intro

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Classroom Contents

Understanding File Formats in Bioinformatics - VCF and gVCF

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  1. 1 Intro
  2. 2 What is a VCF file and how is it generated?
  3. 3 Main sections of a VCF file
  4. 4 Metadata section
  5. 5 Header line
  6. 6 Data lines - description of fields
  7. 7 Genes and alleles
  8. 8 Understanding genotype
  9. 9 What does genotype 2/0 or 1/2 mean?
  10. 10 Difference between GT:0/1 and GT:0|1 - phased vs unphased genotype
  11. 11 How are variants recorded in a VCF file?
  12. 12 Interpreting a record in VCF
  13. 13 Genomic VCF gVCF

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