Learn to manipulate VCF (Variant Call Format) files using bcftools in this comprehensive bioinformatics tutorial. Master essential techniques including reading, indexing, and extracting information from VCF files. Explore methods for counting variants, renaming chromosomes, and splitting files based on sample IDs. Gain practical skills in variant calling using tools like Snippy and BCFTOOLS, and discover how to perform advanced operations such as separating SNPs and indels. Ideal for beginners and intermediate learners looking to enhance their bioinformatics skills in genomic data analysis.
Overview
Syllabus
How to read VCF files using bcftools tutorial | Bioinformatics for Beginners | Course.
How to read VCF files using bcftools | indexing VCFs.
Linux for Bioinformatics | How to count the number variants in a VCF file | Beginners Course.
How to read VCF files using bcftools | Extract and view chromosome names.
Rename chromosomes in a VCF file using bcftools.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
BCFTOOLS tutorial on how to count the number of snps and indels in a vcf file | Bioinformatics.
Extract sample ids from vcf files using bcftools | Bioinformatics Tutorial.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Bioinformatics Tutorial: Count the number of variants per chromosome in a VCF file using bcftools.
Bioinformatics Tutorial | Split a VCF file into snps and indels using bcftools- full tutorial.
Split or Subset VCF files based on Sample IDs using bcftools.
Taught by
Bioinformatics Coach
