Dive into an extensive 8-hour bioinformatics tutorial covering post-genome assembly techniques for bacterial genomes. Learn genome annotation using PROKKA, visualization with Artemis and DNAPlotter, and assembly and annotation using PGAP. Explore identification of insertion sequence elements using ISfinder and genome visualization with CGView. Gain hands-on experience in pangenome analysis, antimicrobial resistance gene identification with Abricate, and virulence factor detection. Master phylogenetic tree construction using RAxML, iTOL, MUSCLE, and PhyML. Delve into variant calling techniques with BCFTOOLS and Snippy. Conclude with comparative genomics and genome comparison using BRIG software, equipping yourself with essential skills for bacterial genome analysis.
Overview
Syllabus
A bioinformatics tutorial on genome annotation of bacterial genomes using PROKKA (updated video).
Genome Visualization using Artemis (DNAPlotter) | Bioinformatics for Beginners | Course | Tutorial.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | Bacterial Genomes | Prokka.
Bioinformatics for beginners | Course | Genome Assembly and annotation using PGAP | Tutorial.
Bioinformatics for Beginners| HOW TO IDENTIFY INSERTION SEQUENCE ELEMENTS IN GENOMES | ISFINDER.
Bioinformatics for Beginners | Course | Genome visualization using the online CGView tool.
Hands-on bioinformatics tutorial on Pangenome analysis of bacterial genomes | Beginners Course.
A bioinformatics tutorial on how to identify Antimicrobial Resistance Genes | Abricate | Beginners.
A bioinformatics tutorial on how to Identify Virulence Factors in Genomes using Abricate | Beginners.
How to Build Phylogenetic Trees using RAxML and iTOL | Bioinformatics for Beginners |Tutorial.
Visualize phylogenetic trees using iTOL.
Build Phylogenetic Trees based on Gene Sequences.
Build Phylogenetic trees with MUSCLE and PhyML.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
A bioinformatics tutorial on Bacterial Genome Analysis | Comparative Genomics.
A bioinformatics tutorial on Genome comparison using BRIG software.
Taught by
Bioinformatics Coach
