Dive into an extensive 8-hour bioinformatics tutorial covering bacterial genomics, designed for beginners. Learn genome comparison techniques using BRIG software, explore genome assembly and annotation processes for both Illumina and Nanopore reads using tools like SPAdes and FLYE, and master bacterial genome analysis through comparative genomics. Gain hands-on experience with genome annotation using Prokka and PGAP, create phylogenetic trees using MUSCLE, PHYML, and RAxML, and visualize results with iTOL. Discover how to identify insertion sequence elements, antimicrobial resistance genes, and virulence factors in genomes using tools like ISfinder and Abricate. Practice genome visualization techniques with CGView and Artemis (DNAPlotter), and delve into pangenome analysis of bacterial genomes. Develop skills in variant calling using Snippy and explore microbial bioinformatics concepts throughout this comprehensive course offered by Bioinformatics Coach.
Overview
Syllabus
A bioinformatics tutorial on Genome comparison using BRIG software.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | Bacterial Genomes | Prokka.
A bioinformatics tutorial on Bacterial Genome Analysis | Comparative Genomics.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | llumina Reads | SPAdes.
A bioinformatics tutorial on GENOME ASSEMBLY | COMBINING NANOPORE AND ILLUMINA READS.
Bioinformatics for beginners | Course | Genome Assembly and annotation using PGAP | Tutorial.
Create phylogenetic trees using MUSCLE and PHYML.
Bioinformatics for Beginners| HOW TO IDENTIFY INSERTION SEQUENCE ELEMENTS IN GENOMES | ISFINDER.
Bioinformatics for Beginners | Course | Genome visualization using the online CGView tool.
Genome Visualization using Artemis (DNAPlotter) | Bioinformatics for Beginners | Course | Tutorial.
Hands-on bioinformatics tutorial on Pangenome analysis of bacterial genomes | Beginners Course.
A bioinformatics tutorial on how to identify Antimicrobial Resistance Genes | Abricate | Beginners.
A bioinformatics tutorial on how to Identify Virulence Factors in Genomes using Abricate | Beginners.
Build Phylogenetic Trees based on Gene Sequences.
How to Build Phylogenetic Trees using RAxML and iTOL | Bioinformatics for Beginners |Tutorial.
Visualize phylogenetic trees using iTOL.
A bioinformatics tutorial on genome annotation of bacterial genomes using PROKKA (updated video).
Genome Assembly Tutorial | ONT reads | FLYE | Bioinformatics for Beginners.
Identify Antimicrobial resistance genes in multiple input samples.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
Taught by
Bioinformatics Coach
