Explore a comprehensive series of bcftools tutorials designed for bioinformatics beginners. Learn essential skills for working with VCF files, including reading, indexing, and extracting chromosome names. Master techniques for renaming chromosomes, counting SNPs and indels, extracting sample IDs, and performing variant calling. Discover how to count variants per chromosome, split VCF files into SNPs and indels, and subset files based on sample IDs. Gain practical knowledge to enhance your bioinformatics toolkit and improve your ability to analyze genetic variation data effectively.
Overview
Syllabus
How to read VCF files using bcftools tutorial | Bioinformatics for Beginners | Course.
How to read VCF files using bcftools | indexing VCFs.
How to read VCF files using bcftools | Extract and view chromosome names.
Rename chromosomes in a VCF file using bcftools.
BCFTOOLS tutorial on how to count the number of snps and indels in a vcf file | Bioinformatics.
Extract sample ids from vcf files using bcftools | Bioinformatics Tutorial.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Bioinformatics Tutorial: Count the number of variants per chromosome in a VCF file using bcftools.
Bioinformatics Tutorial | Split a VCF file into snps and indels using bcftools- full tutorial.
Split or Subset VCF files based on Sample IDs using bcftools.
Taught by
Bioinformatics Coach
