Explore a comprehensive tutorial series on Biopython for bioinformatics applications. Learn to read FASTA files, perform DNA-to-protein transcription and translation, analyze FASTQ quality scores, and access NCBI databases using Entrez. Master pairwise sequence alignment, execute BLAST queries, and conduct COVID-19 genome sequence analysis. Discover techniques for 3D protein visualization, handling sequence motif objects, and plotting sequence data with matplotlib. Improve efficiency by implementing faster reads of sequence files and sorting large FASTA/FASTQ files. Gain practical skills in filtering FASTQ files by PHRED quality scores and dive into a full hour-long Python for Bioinformatics course to solidify your understanding of Biopython's capabilities in genomic data analysis.
Overview
Syllabus
Bioinformatics How to read FASTA files with Python and Biopython Tutorial.
Bioinformatics From DNA to RNA to Protein using Biopython [Transcription and Translation].
Bioinformatics Analysis of Quality Scores from FASTQ file using Biopython.
Bioinformatics Accessing NCBI databases and tools with Biopython [Entrez].
Bioinformatics Pairwise sequence alignment/pairwise2 in Biopython.
Bioinformatics Running BLAST queries and performing sequence alignment with Biopython.
Bioinformatics COVID-19 Genome Sequence Analysis using Biopython.
Bioinformatics COVID-19 BLAST search using Biopython.
Bioinformatics COVID-19 3D protein visualisation using Biopython and nglview.
Bioinformatics Creating and handling Sequence motif objects in Biopython.
Bioinformatics Plotting sequence lengths and GC content with Biopython and matplotlib.
Bioinformatics Faster reads of sequence FASTA and FASTQ files with Biopython.
Bioinformatics Sorting big FASTA/FASTQ files by sequence length with Biopython.
Bioinformatics Filtering FASTQ files by PHRED quality scores with Biopython.
Bioinformatics with Biopython - Full Course | 1 hour Python for Bioinformatics tutorial.
Taught by
Lana Caldarevic
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Reviews
5.0 rating, based on 2 Class Central reviews
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Subaragavi IlavarasanThe course was really amazing, and the teacher was really awesome. I like her teaching skills.and the way of explain is really helpfull to me. Please provide the certificate. -
It was an amazing experience. The course was easy to understand and very interactive. I have learned a lot about Bioinformatics and Python.
