Explore a comprehensive 1.5-hour video tutorial on Biopython, covering essential bioinformatics techniques and tools. Learn to analyze quality scores from FASTQ files, access NCBI databases using Entrez, perform pairwise sequence alignments, run BLAST queries, and conduct COVID-19 genome sequence analysis. Discover how to create and handle sequence motif objects, plot sequence lengths and GC content using matplotlib, efficiently read FASTA and FASTQ files, sort large genomic datasets, and filter FASTQ files by PHRED quality scores. Gain practical skills in Python-based bioinformatics through this extensive tutorial, designed to enhance your understanding of genomic data analysis and manipulation using Biopython.
Overview
Syllabus
Bioinformatics Analysis of Quality Scores from FASTQ file using Biopython.
Bioinformatics Accessing NCBI databases and tools with Biopython [Entrez].
Bioinformatics Pairwise sequence alignment/pairwise2 in Biopython.
Bioinformatics Running BLAST queries and performing sequence alignment with Biopython.
Bioinformatics COVID-19 Genome Sequence Analysis using Biopython.
Bioinformatics COVID-19 BLAST search using Biopython.
Bioinformatics COVID-19 3D protein visualisation using Biopython and nglview.
Bioinformatics Creating and handling Sequence motif objects in Biopython.
Bioinformatics Plotting sequence lengths and GC content with Biopython and matplotlib.
Bioinformatics Faster reads of sequence FASTA and FASTQ files with Biopython.
Bioinformatics Sorting big FASTA/FASTQ files by sequence length with Biopython.
Bioinformatics Filtering FASTQ files by PHRED quality scores with Biopython.
Bioinformatics with Biopython - Full Course | 1 hour Python for Bioinformatics tutorial.
Taught by
Lana Caldarevic
