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XuetangX

高通量DNA测序技术

Southeast University via XuetangX

Overview

Learn about high-throughput DNA sequencing technology through this comprehensive course covering fundamental principles to advanced applications. Begin with an introduction to the significance of high-throughput DNA sequencing before diving into sequencing chemistry, including synthesis methods and nucleotide marking techniques. Master genome sample processing and amplification technologies, exploring nucleic acid isolation, library preparation, emulsion PCR, and bridge PCR. Study sequencing library preparation techniques including coded libraries, single-cell sequencing, and spatial transcriptomics. Examine the structure and operating principles of second-generation sequencing instruments, focusing on fluorescence excitation, CCD imaging devices, microfluidic chips, and integrated sequencing chips. Explore third-generation methods including single-molecule imaging and nanopore array sequencing. Discover practical applications in scientific research, DNA storage technology, and personalized medicine, including uses in pathogenic microorganism research, tumor gene detection, and disease susceptibility gene testing.

Syllabus

  • 第一章:绪论
    • 1.1 高通量DNA测序技术的起因和意义
  • 第二章:高通量DNA测序化学
    • 2.1 高通量DNA合成测序化学
    • 2.2 单标记核苷酸的合成测序化学
    • 2.3 两核苷酸合成测序化学
  • 第三章:基因组样本处理及扩增技术
    • 3.1 核酸的分离纯化
    • 3.2 核酸文库制备
    • 3.3 乳液PCR
    • 3.4 桥式PCR
  • 第四章:测序文库制备技术
    • 4.1 编码文库
    • 4.2 单细胞测序
    • 4.3 空间转录组测序
  • 第五章:第二代高通量DNA测序仪器结构与工作原理
    • 5.1 荧光激发和检测
    • 5.2 CCD固态成像器件
    • 5.3 微流控芯片
    • 5.4 集成化测序芯片
  • 第六章:第三代高通量DNA测序方法与仪器
    • 6.1 单分子成像测序
    • 6.2 纳米孔阵列测序
  • 第七章:高通量DNA测序技术在科学研究中的应用
    • 7.1 在基因组研究中的应用
    • 7.2 DNA存储技术
  • 第八章:高通量DNA测序技术与个体化医疗
    • 8.1 NGS在病原微生物研究中的应用
    • 8.2 NGS在肿瘤基因检测中的应用
    • 8.3 NGS在疾病易感基因检测中的应用
  • 期末考试

    Taught by

    Xiao Pengfeng, Ge Qinyu, Lv Hua, Bai Yunfei, and Pan Min

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