Molecular Dynamics Courses and Certifications

Simons Institute

Generalizable Sampling of Conformational Ensembles with Latent Space Dynamics

Explore innovative techniques for sampling conformational ensembles using latent space dynamics, enhancing our understanding of complex molecular systems and their behavior.

• YouTube
• 1 hour 2 minutes
• On-Demand
• Free Video

nanohubtechtalks

Building a Graphical Interface for Exploring Protein Dynamics and Spectroscopy - PigmentHunter

Explore protein dynamics and spectroscopy with PigmentHunter, a user-friendly nanoHUB tool for simulating excitonic spectra of chlorophyll proteins. Learn its interface, workflow, and applications in molecular dynamics and spectral analysis.

• YouTube
• 30 minutes
• On-Demand
• Free Video

Erwin Schrödinger International Institute for Mathematics and Physics (ESI)

A Large Deviation Perspective on Nanoscale Transport Phenomena

Explore nanoscale transport phenomena through large deviation theory, examining current fluctuations in nonequilibrium states and their relation to nonlinear responses in complex systems.

• YouTube
• 43 minutes
• On-Demand
• Free Video

Erwin Schrödinger International Institute for Mathematics and Physics (ESI)

A Coarse-Grained Molecular Dynamics Study of Damage Localization During the Fracture of Double Polymer Networks

Explore molecular dynamics of damage localization in double polymer networks, focusing on mechanisms behind increased toughness and the interplay between load sharing and damage propagation.

• YouTube
• 14 minutes
• On-Demand
• Free Video

Erwin Schrödinger International Institute for Mathematics and Physics (ESI)

MaZe: A New Approach for Simulating Adiabatic Systems - Lecture

Explore MaZe, a novel approach for simulating adiabatic systems in physics. Learn about its applications in first principles simulations, polarizable systems, and ionic transport studies.

• YouTube
• 39 minutes
• On-Demand
• Free Video

ICTP-SAIFR

Constant-pH MD Simulations as a Tool to Unveil pH Effects on Biomolecules

Explore constant-pH MD simulations to uncover pH effects on biomolecules. Gain insights into advanced molecular biophysics techniques and their applications.

• YouTube
• 38 minutes
• On-Demand
• Free Video

ICTP-SAIFR

Quantifying Large-Scale Dynamics of Complex Molecular Assemblies

Explore quantitative methods for analyzing large-scale dynamics in complex molecular systems, focusing on advanced techniques and their applications in molecular biophysics.

• YouTube
• 34 minutes
• On-Demand
• Free Video

ICTP-SAIFR

Computational Biophysics Approaches to Mechanosensing

Explore computational biophysics methods for understanding mechanosensing, focusing on cutting-edge approaches and their applications in molecular biology research.

• YouTube
• 44 minutes
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Modelling NMR Properties of Complex Molecular Materials by Means of an Integrated MD-QM/MM Approach

Dive into advanced molecular dynamics and quantum mechanics approaches for modeling NMR properties of complex materials, with focus on integrated MD-QM/MM methodology.

• YouTube
• 1 hour 8 minutes
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Using ChatGPT in Molecular Dynamics Simulations - Applications to Nucleic Acids

Discover how to leverage ChatGPT for molecular dynamics simulations, focusing on nucleic acids analysis and computational physics applications in DNA research.

• YouTube
• 1 hour 1 minute
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Computer Simulations of DNA-Ligand Intercalation Complexes - Special Features

Dive into advanced computational methods for studying DNA-ligand intercalation complexes, exploring simulation techniques and key molecular interactions in biophysical research.

• YouTube
• 1 hour
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Force Fields and Molecular Dynamics Simulations - Applications to Nucleic Acids

Dive into molecular dynamics simulations and force fields, exploring their practical applications in nucleic acid research through advanced computational physics methods and theoretical frameworks.

• YouTube
• 1 hour 11 minutes
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Molecular Dynamics: From the Problem of Hard Spheres to the DNA Macromolecule

Explore molecular dynamics principles and applications, from basic hard sphere models to complex DNA macromolecular structures in this comprehensive physics workshop lecture.

• YouTube
• 58 minutes
• On-Demand
• Free Video

Bogolyubov Institute for Theoretical Physics

Molecular Dynamics Analysis of Particle Number Fluctuations in First-Order Phase Transitions

Explore molecular dynamics analysis of particle fluctuations during first-order phase transitions through advanced theoretical physics research presented at the XIV Young Scientists Conference.

• YouTube
• 19 minutes
• On-Demand
• Free Video

Valence Labs

Accelerate Atomistic Simulations, Sampling, and Dynamics - Day 2

Explore advanced techniques for accelerating atomistic simulations, enhancing sampling methods, and optimizing dynamics in drug discovery research.

• YouTube
• 1 hour 1 minute
• On-Demand
• Free Video