Explore a comprehensive 28-minute tutorial on using varLD software for analyzing selection signatures based on linkage disequilibrium patterns between populations. Learn the entire workflow, from obtaining SNP genotype data to visualizing results. Cover prerequisites, data acquisition, format transformation using PLINK, running varLD, and result interpretation. Gain hands-on experience with genetic analysis tools and techniques essential for identifying population-specific selection patterns in genomics research.
VarLD- Linkage Disequilibrium Based Selection Signatures - A Comprehensive Tutorial
Genomics Boot Camp via YouTube
Overview
Syllabus
- Intro
- Prerequisites
- Data source
- varLD program and manual
- Data preparation with PLINK and Rstats
- Run varLD and process the results
- Visualization of the results
Taught by
Genomics Boot Camp
