Modeling Spatial Omics and Cellular Niches with Graph Neural Networks
Computational Genomics Summer Institute CGSI via YouTube
Overview
Syllabus
Introduction
Single cell analysis
Spatial proteomics
Measuring spatial omics
Imaging spatial omics
Modeling spatial omics
Space GM
Representation Learning
Message Passing Walkthrough
Capturing 2D Slices
Clustering
Case Study
Spatial Clusters
Coherence
Overall Framework
Training the Model
Generalizing the Model
Workflow Summary
Subcellular Morphologies
Generating Synthetic Data
Summary
Taught by
Computational Genomics Summer Institute CGSI