Explore the features of Elucidata's Bulk RNA-Seq OmixAtlas in this informative video tutorial. Learn how this AI-enabled cloud platform simplifies the process of searching and retrieving relevant RNA-Seq datasets. Discover the advantages of using Polly's OmixAtlas over traditional public sources like NCBI GEO, including easier dataset discovery, intuitive searching, and harmonized data. Follow along with a practical test case to compare dataset lookup between NCBI GEO and Polly's bulk OmixAtlas. Gain insights into useful features such as exploring sample metadata, cohort overviews, and visual data exploration using Phantasus. Understand how to download data from the platform and learn about the top 5 features that make Polly's bulk OmixAtlas an effortless dataset discovery and retrieval solution for bioinformatics researchers.
Elucidata's Bulk RNA-Seq OmixAtlas - Effortless Dataset Discovery and Retrieval
Overview
Syllabus
Intro
Public sources of gene expression data
Pain points of searching datasets on NCBI GEO
Challenges faced with data on NCBI GEO
Introducing OmixAtlases on Elucidata’s Polly
Today’s test case
Looking at the bulk OmixAtlases on Polly
Using test query to look up datasets on NCBI GEO dataset browser
Using test query to look up datasets on Polly’s bulk OmixAtlas
Useful features of Polly’s bulk OmixAtlas
Exploring sample metadata & cohort overview
Visually explore datasets using Phantasus
Download data from Polly’s bulk OmixAtlas
Top 5 features
Taught by
bioinformagician
