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Classroom Contents
Learning to Untangle Genome Assembly Graphs - IPAM at UCLA
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- 1 Intro
- 2 Outline
- 3 Genome Sequencing Machine
- 4 Genome Assembly Problem
- 5 Challenges
- 6 Raven Genome Assembler
- 7 Machine Learning Framework
- 8 Assembly Graph Construction
- 9 Edge Labeling
- 10 Designing GNNs for Assembly Graphs
- 11 Edge Prediction Layer
- 12 Network Training
- 13 Experimental Setting
- 14 Evaluation
- 15 Dataset and Code
