Learning to Untangle Genome Assembly Graphs - IPAM at UCLA

Learning to Untangle Genome Assembly Graphs - IPAM at UCLA

Institute for Pure & Applied Mathematics (IPAM) via YouTube Direct link

Intro

1 of 15

1 of 15

Intro

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Learning to Untangle Genome Assembly Graphs - IPAM at UCLA

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  1. 1 Intro
  2. 2 Outline
  3. 3 Genome Sequencing Machine
  4. 4 Genome Assembly Problem
  5. 5 Challenges
  6. 6 Raven Genome Assembler
  7. 7 Machine Learning Framework
  8. 8 Assembly Graph Construction
  9. 9 Edge Labeling
  10. 10 Designing GNNs for Assembly Graphs
  11. 11 Edge Prediction Layer
  12. 12 Network Training
  13. 13 Experimental Setting
  14. 14 Evaluation
  15. 15 Dataset and Code

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