Microbiome Bioinformatics with QIIME 2 - Online Workshop

Microbiome Bioinformatics with QIIME 2 - Online Workshop

QIIME 2 via YouTube Direct link

Beta diversity metrics

22 of 30

22 of 30

Beta diversity metrics

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Classroom Contents

Microbiome Bioinformatics with QIIME 2 - Online Workshop

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  1. 1 A high-level introduction to QIIME 2
  2. 2 Semantic types and data formats in QIIME 2
  3. 3 Linux File System and Command Line Interface Refresher
  4. 4 PD Mice: Study background and information
  5. 5 Sample Metadata
  6. 6 PD Mice: Sample Metadata
  7. 7 16S Lab protocols
  8. 8 Sharing your analysis results with collaborators using QIIME 2 View
  9. 9 Importing and demultiplexing
  10. 10 PD Mice: Importing demultiplexed sequences
  11. 11 Denoising
  12. 12 PD Mice: Denoising
  13. 13 PD Mice: Phylogenetic reconstruction
  14. 14 Phylogenetic reconstruction
  15. 15 Taxonomic assignment
  16. 16 PD Mice: Taxonomic classification
  17. 17 Rarefaction
  18. 18 PD Mice: Even Sampling Depth
  19. 19 PD Mice: Core metrics phylogenetic tutorial
  20. 20 Alpha diversity metrics
  21. 21 PD Mice: Alpha diversity visualizations
  22. 22 Beta diversity metrics
  23. 23 PD Mice: Beta diversity visualizations
  24. 24 Differential Abundance Testing
  25. 25 PD Mice: ANCOM differential abundance testing
  26. 26 Sample classification
  27. 27 PD Mice: Sample classification
  28. 28 Longitudinal analyses
  29. 29 PD Mice: Longitudinal Analyses
  30. 30 PD Mice: Synthesis

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