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PD Mice: Phylogenetic reconstruction
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Classroom Contents
Microbiome Bioinformatics with QIIME 2 - Online Workshop
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- 1 A high-level introduction to QIIME 2
- 2 Semantic types and data formats in QIIME 2
- 3 Linux File System and Command Line Interface Refresher
- 4 PD Mice: Study background and information
- 5 Sample Metadata
- 6 PD Mice: Sample Metadata
- 7 16S Lab protocols
- 8 Sharing your analysis results with collaborators using QIIME 2 View
- 9 Importing and demultiplexing
- 10 PD Mice: Importing demultiplexed sequences
- 11 Denoising
- 12 PD Mice: Denoising
- 13 PD Mice: Phylogenetic reconstruction
- 14 Phylogenetic reconstruction
- 15 Taxonomic assignment
- 16 PD Mice: Taxonomic classification
- 17 Rarefaction
- 18 PD Mice: Even Sampling Depth
- 19 PD Mice: Core metrics phylogenetic tutorial
- 20 Alpha diversity metrics
- 21 PD Mice: Alpha diversity visualizations
- 22 Beta diversity metrics
- 23 PD Mice: Beta diversity visualizations
- 24 Differential Abundance Testing
- 25 PD Mice: ANCOM differential abundance testing
- 26 Sample classification
- 27 PD Mice: Sample classification
- 28 Longitudinal analyses
- 29 PD Mice: Longitudinal Analyses
- 30 PD Mice: Synthesis
