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Sample processing pipeline - throughput
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High-throughput Diagnostics and Sequencing at the Pandemic Response Lab NYC
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- 1 Intro
- 2 The CoV2 test principle is straightforward How do we make it high throughput?
- 3 CoV2 test steps
- 4 CoV2 assay targets
- 5 CoV2 assay details
- 6 Test development timeline
- 7 Virus inactivation
- 8 RNA extraction
- 9 Sample processing pipeline - throughput
- 10 Equipment stoichiometry - one 'line' PRL NYC has three lines operating
- 11 Sample tracking and analysis - DaViD
- 12 Future of sample tracking
- 13 DaViD-analysis interface
- 14 Test statistics
- 15 Current optimization work
- 16 Changing sample collection paradigm
- 17 Pooled testing
- 18 At-home saliva collection
- 19 What's next for PRL testing?
- 20 CoV2 whole genome sequencing
- 21 Sequencing pipeline is integrated into the testing line
- 22 Sequencing pipeline overview
- 23 Sequencing development timeline
- 24 GISAID submissions by state
- 25 Variant growth over time
- 26 NYC variant sequences from PRL
- 27 NYC variant distributions from PRL
- 28 NYC variant distributions - B.1.1.7
- 29 NYC variant distributions - B.1.526 +E484K
- 30 PRL testing vs sequencing distribution
- 31 Executive team
- 32 Scientific Advisory Board
- 33 The team that does it all
