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Classroom Contents
Selecting Between-sample ChIP-Seq Normalization Methods - Assumptions and Implications
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- 1 Intro
- 2 High throughput sequencing
- 3 What is ChIP sequencing
- 4 Differential binding
- 5 RNAseq
- 6 How much does normalization matter
- 7 Library size
- 8 Background bins
- 9 Road map
- 10 Capital T truth
- 11 Factoring
- 12 spiking controls
- 13 symmetry
- 14 Asymmetry
- 15 Size Factors
- 16 Relative Log Expression
- 17 Technical Conditions
- 18 Simulations
- 19 False Discovery Rate
- 20 Symmetrical DNA Binding
- 21 Background Bin
- 22 Entire Genome
- 23 Four Images
- 24 Technical Condition
- 25 Trend
- 26 Data
- 27 Principal Components
- 28 Summary
- 29 Controls
- 30 Biological Experiment
- 31 Conclusion
