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Pain points of searching datasets on NCBI GEO
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Classroom Contents
Elucidata's Bulk RNA-Seq OmixAtlas - Effortless Dataset Discovery and Retrieval
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- 1 Intro
- 2 Public sources of gene expression data
- 3 Pain points of searching datasets on NCBI GEO
- 4 Challenges faced with data on NCBI GEO
- 5 Introducing OmixAtlases on Elucidata’s Polly
- 6 Today’s test case
- 7 Looking at the bulk OmixAtlases on Polly
- 8 Using test query to look up datasets on NCBI GEO dataset browser
- 9 Using test query to look up datasets on Polly’s bulk OmixAtlas
- 10 Useful features of Polly’s bulk OmixAtlas
- 11 Exploring sample metadata & cohort overview
- 12 Visually explore datasets using Phantasus
- 13 Download data from Polly’s bulk OmixAtlas
- 14 Top 5 features
