Demystifying Conda and Virtual Environments for Bioinformatics

Demystifying Conda and Virtual Environments for Bioinformatics

bioinformagician via YouTube Direct link

What’s with different condas - Anaconda, Miniconda and Bioconda?

4 of 17

4 of 17

What’s with different condas - Anaconda, Miniconda and Bioconda?

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Classroom Contents

Demystifying Conda and Virtual Environments for Bioinformatics

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  1. 1 Intro
  2. 2 What are virtual environments?
  3. 3 What is conda?
  4. 4 What’s with different condas - Anaconda, Miniconda and Bioconda?
  5. 5 renv vs conda
  6. 6 Demonstration goals and requirements
  7. 7 conda installation instructions
  8. 8 conda channels and priorities
  9. 9 Search for conda packages
  10. 10 base environment in conda
  11. 11 Checking local versions of the tools and searching for required conda packages
  12. 12 Create virtual environment in conda
  13. 13 Export environment to a YAML file .yml file
  14. 14 Create a conda environment from a YAML file
  15. 15 Why having a centralized location for all packages is problematic for analysis in R?
  16. 16 Creating R projects and using renv within projects
  17. 17 Sharing renv - save package version information to a .lock file

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