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Classroom Contents
Demystifying Conda and Virtual Environments for Bioinformatics
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- 1 Intro
- 2 What are virtual environments?
- 3 What is conda?
- 4 What’s with different condas - Anaconda, Miniconda and Bioconda?
- 5 renv vs conda
- 6 Demonstration goals and requirements
- 7 conda installation instructions
- 8 conda channels and priorities
- 9 Search for conda packages
- 10 base environment in conda
- 11 Checking local versions of the tools and searching for required conda packages
- 12 Create virtual environment in conda
- 13 Export environment to a YAML file .yml file
- 14 Create a conda environment from a YAML file
- 15 Why having a centralized location for all packages is problematic for analysis in R?
- 16 Creating R projects and using renv within projects
- 17 Sharing renv - save package version information to a .lock file
