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How to get the markers for each label from individual references?
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Automatic Cell Annotation for Single-Cell RNA-Seq Data - Multiple Reference Strategies in SingleR - Part 2
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- 1 Intro
- 2 Strategies for using multiple reference datasets for annotation
- 3 Study design and goal of the analysis
- 4 Fetching 2 reference datasets from celldex package
- 5 Annotation strategy 1: Using a combined reference
- 6 Visualize results of strategy 1 in a UMAP
- 7 Annotation strategy 2: Comparing scores across references
- 8 Which reference scored the best for which label?
- 9 How to get the markers for each label from individual references?
- 10 Combined diagnostic heatmap
- 11 Lack of consistency in labels across references
- 12 Annotation strategy 3: Using harmonized labels
- 13 How to map cell ontology terms to labels?
