Completed
Strategies for using multiple reference datasets for annotation
Class Central Classrooms beta
YouTube videos curated by Class Central.
Classroom Contents
Automatic Cell Annotation for Single-Cell RNA-Seq Data - Multiple Reference Strategies in SingleR - Part 2
Automatically move to the next video in the Classroom when playback concludes
- 1 Intro
- 2 Strategies for using multiple reference datasets for annotation
- 3 Study design and goal of the analysis
- 4 Fetching 2 reference datasets from celldex package
- 5 Annotation strategy 1: Using a combined reference
- 6 Visualize results of strategy 1 in a UMAP
- 7 Annotation strategy 2: Comparing scores across references
- 8 Which reference scored the best for which label?
- 9 How to get the markers for each label from individual references?
- 10 Combined diagnostic heatmap
- 11 Lack of consistency in labels across references
- 12 Annotation strategy 3: Using harmonized labels
- 13 How to map cell ontology terms to labels?
