Bioinformatics With BB Courses

Molecular Dynamics Simulation with GROMACS - Installation and Beginner Tutorial

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Step-by-step guide to install GROMACS and run a beginner-level molecular dynamics simulation of a protein in water, covering both Windows and Linux platforms.

• YouTube
• 24 minutes
• On-Demand
• Free Video

Graph ggPLOT Beginner Tutorial - Creating Simple Graphs in R

Learn to create simple graphs using ggplot2 in R, enhancing your data visualization skills for effective analysis and presentation.

• YouTube
• 37 minutes
• On-Demand
• Free Video

Molecular Docking with AutoDock VINA - Script-Based Method for Multiple Ligands

Learn script-based molecular docking with AutoDock Vina for virtual screening of multiple ligands. Explore conformational space, calculate binding energies, and identify potential lead compounds efficiently.

• YouTube
• 28 minutes
• On-Demand
• Free Video

Protein-Protein Docking Tutorial for Beginners Using ClusPro, PatchDock, and Hex

Learn to perform protein-protein docking using validated tools like ClusPro, PatchDock, and Hex. Gain hands-on experience with step-by-step demonstrations and access to relevant literature.

• YouTube
• 26 minutes
• On-Demand
• Free Video

PyMol Advanced Session: Protein-Ligand Interactions and Plugin Installation

Explore advanced Pymol features: protein-ligand interactions, plugin installation, and protein annotations. Learn to visualize and analyze molecular structures effectively.

• YouTube
• 30 minutes
• On-Demand
• Free Video

Creating Simple Graphs in R Studio - Bar, Scatter, and Box Plots

Learn to create bar graphs, scatter plots, pie charts, and box plots using simple R functions for effective data visualization in RStudio.

• YouTube
• 29 minutes
• On-Demand
• Free Video

Molecular Dynamics Simulations with Gromacs - Beginner Tutorial Session 2

Learn MD simulation steps, RMSD/RMSF graph generation in Windows using Gromacs. Covers system preparation, energy minimization, equilibration, and analysis for molecular dynamics simulations.

• YouTube
• 24 minutes
• On-Demand
• Free Video

PCR Primer Designing Using NCBI Primer BLAST - In Silico Design and Validation

Learn to design PCR primers using NCBI Primer BLAST, covering key requirements, tools, and step-by-step process for effective primer selection and validation in molecular biology applications.

• YouTube
• 22 minutes
• On-Demand
• Free Video

Molecular Docking and Virtual Screening with AutoDock VINA - Bioinformatics Tutorial

Learn molecular docking with AutoDock VINA for virtual screening in drug discovery. Explore ligand-protein interactions, scoring functions, and post-processing techniques to identify potential lead compounds.

• YouTube
• 25 minutes
• On-Demand
• Free Video

Molecular Docking Analysis - Autodock Results and Visualization

Learn to analyze molecular docking results using Autodock, extract key scores, and generate 2D/3D visualizations with tools like Pymol and LigPlot for effective protein-ligand interaction studies.

• YouTube
• 25 minutes
• On-Demand
• Free Video

Molecular Docking for Beginners - Autodock Full Tutorial

Guía paso a paso sobre acoplamiento molecular proteína-ligando utilizando AutoDock. Aprenda a investigar interacciones a nivel atómico para comprender mecanismos bioquímicos.

• YouTube
• 35 minutes
• On-Demand
• Free Video

Bioinformatics Methods for Protein Function Identification - Domains and Transmembrane Regions

Explore protein sequence annotation using computational tools for properties, domains, transmembrane regions, and structural elements. Learn to analyze amino acid sequences effectively.

• YouTube
• 34 minutes
• On-Demand
• Free Video

Homology Modeling for Beginners - COVID-19 NP Protein Modeling - Session 2

Learn sequence alignment, model generation, and validation for COVID-19 NP protein using Modeller and PROCHECK tools in this practical bioinformatics tutorial on homology modeling.

• YouTube
• 32 minutes
• On-Demand
• Free Video

Homology Modeling for Beginners - COVID-19 NP Protein Modeling with Modeller

Learn homology modeling basics and hands-on pipeline using Modeller tool to construct atomic-resolution protein models from amino acid sequences and related homologous structures.

• YouTube
• 25 minutes
• On-Demand
• Free Video

NGS Analysis Practical Using Galaxy Server - Section 1

Hands-on demonstration of NGS analysis using Galaxy server, covering step-by-step procedures and providing practical insights for bioinformatics researchers.

• YouTube
• 1 hour 9 minutes
• On-Demand
• Free Video