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YouTube

STRUCTURE Harvester: Determining Optimal Subpopulations Using Python Scripts

Genomics Boot Camp via YouTube

Overview

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Learn how to determine the optimal number of subpopulations in genomic data through a 27-minute tutorial video focusing on STRUCTURE Harvester implementation via Python scripts. Explore the alternative approach to using the STRUCTURE Harvester tool since the website is currently unavailable. Begin with an introduction to STRUCTURE Harvester, followed by guidance on performing repeated iterative STRUCTURE runs. After a segment about NEOGEN services (including a special discount code for viewers), dive into a practical demonstration of running STRUCTURE Harvester and interpreting its results. Access helpful resources including the STRUCTURE Harvester GitHub repository, relevant Google Groups discussions, and a research paper explaining result interpretation. Connect with Neogen's team for assistance with genotyping or sequencing projects using the provided GENOMICSBOOTCAMP discount code.

Syllabus

0:00 - - Structure Harvester intro
4:55 - - Repeated iterative STRUCTURE runs
10:37 - - Info about NEOGEN with discount code
14:15 - - Structure Harvester run
22:25 - - Structure Harvester results

Taught by

Genomics Boot Camp

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