Explore data mining techniques for biological databases in this comprehensive 2.5-hour tutorial series. Learn how to download and analyze gene expression data from TCGA, retrieve sequences from NCBI using both browser and Python methods, and utilize the SRA toolkit for efficient data acquisition. Gain proficiency in R programming for bioinformatics tasks, including converting Ensembl IDs to gene symbols using biomaRt. Discover various biological databases and master the process of obtaining gene expression data, providing a solid foundation for beginners in bioinformatics and data mining.
Overview
Syllabus
Bioinformatics for beginners | Course | Download data from TCGA database | Data Mining | Tutorial.
Bioinformatics for Beginners | Download Normal & Tumor gene expression data | tcga database | Python.
Download Sequences from NCBI using your Browser.
Python for Bioinformatics | Download sequences from NCBI.
How to DOWNLOAD Sequence data using SRA toolkit | NCBI | SRA | Bioinformatics tutorial | Part 1.
How to DOWNLOAD Sequence data using SRA toolkit | NCBI | SRA | Bioinformatics tutorial | Part 2.
R for Bioinformatics | Convert Ensembl IDs to Gene Symbols | Episode 1 | R biomaRt.
Biological Databases | Where and how to download Gene Expression Data | Bioinformatics for Beginners.
Taught by
Bioinformatics Coach
