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3D Sholl Analysis Using Python for Neuron Branch Mapping

DigitalSreeni via YouTube

Overview

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Learn to perform 3D Sholl analysis for neuronal morphology through a hands-on Python programming tutorial that demonstrates how to create concentric spherical shells around soma centers and calculate neuronal branch intersections. Master the technique of measuring neuronal complexity by implementing logical operations to count branch crossings at various distances from the soma, with access to complete source code for practical implementation. Explore the fundamental concepts of 3D spatial analysis in neuroscience while developing a script that effectively quantifies neuronal arborization patterns.

Syllabus

3D Sholl Analysis Using Python

Taught by

DigitalSreeni

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