Learn to extract and analyze high-resolution core images from Tissue Microarrays (TMA) in this 13-minute tutorial. Master color separation techniques, perform nuclei segmentation using the StarDist pretrained deep learning model, and calculate mean intensity of brown pixels in nuclear and extra-nuclear (cytosol) regions. Access the accompanying code on GitHub to implement these advanced image analysis techniques for microscopy applications.
Color Separation and Nuclei Segmentation in Tissue Microarray Cores - Tutorial 344
DigitalSreeni via YouTube
Overview
Syllabus
344 Color separation and nuclei segmentation in cores extracted from TMA
Taught by
DigitalSreeni