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Phylogenetic analysis
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Classroom Contents
The Immcantation Suite - A Collection of Open Source Software Tools to Study Antibodies
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- 1 Intro
- 2 Outline
- 3 Kleinstein Lab
- 4 Computational immunology
- 5 The Immcantation suite
- 6 B cells, BCRs, antibodies and repertoires
- 7 V DJ recombination
- 8 Clonal expansion and SHM
- 9 Examples
- 10 Processing of raw AIRR-seq reads
- 11 VD J gene assignment
- 12 Genotyping
- 13 Clonal expansions
- 14 Repertoire properties
- 15 SHM and selection
- 16 Phylogenetic analysis
- 17 immcantation/suite
