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Introduction and background
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Classroom Contents
TCGA Biomarkers Identification Using Machine Learning - Complete Walkthrough
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- 1 Introduction and background
- 2 Chapter 1 - Installing packages and importing libraries
- 3 Using TCGA Biolinks
- 4 Structuring Input data and filtering
- 5 PlotMDS from limma and edgeR
- 6 Normalization of data
- 7 PCA Analysis
- 8 Making Train Label and One -hot Encoding
- 9 Chapter 2 - Neural network construction
- 10 Neural networking Training model fitting
- 11 Saving Model as hdf5 files
- 12 Extraction weights and bias
- 13 Extraction of GOI using weights and bias
- 14 Chapter 3 - Gene set enrichment analysis
- 15 Results!!!!!!
- 16 Some major issues with this approach
