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The OU-model: A framework to model expression evolution
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Classroom Contents
Evolution of Gene Regulation Following Whole Genome Duplication in Salmonids
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- 1 Intro
- 2 Who are the salmonids ?
- 3 The Atlantic salmon Culture and cash
- 4 Salmonids a model for genome evolution after WGD
- 5 Salmonid genomes 101
- 6 Gene loss/retention after Ss4R
- 7 Tissue regulatory divergence
- 8 How does gene regulation diverge?
- 9 Mode of tissue regulation divergence
- 10 Assymetric divergence following ancient vertebrate WGDs
- 11 A challenge... distinguishing between evolutionary scenarios
- 12 The OU-model: A framework to model expression evolution
- 13 The experiment
- 14 Tests for expression level shift
- 15 Tissue specific evolution?
- 16 Signatures of ongoing pseudogenization ?
- 17 Are particular cellular functions
- 18 Brief summary 2: expression evolution following WGD
- 19 Approach: ATAC-seq&TFBS footprinting
- 20 Sanity check = OK
- 21 Cis-regulatory evolution and tissue specificity
- 22 Does Tes contribute to novel 'adaptive' expression phenotypes?
- 23 Brief summary 3: CREs and duplicate expression evolution
- 24 Some concluding thoughts
- 25 Acknowledgements
