Distance-Based Phylogenetics: Past, Present, and Future - CGSI 2022

Distance-Based Phylogenetics: Past, Present, and Future - CGSI 2022

Computational Genomics Summer Institute CGSI via YouTube Direct link

Intro

1 of 15

1 of 15

Intro

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Distance-Based Phylogenetics: Past, Present, and Future - CGSI 2022

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  1. 1 Intro
  2. 2 A (weighted) tree defines a metric space
  3. 3 An additive metric space
  4. 4 How to get distances: Hamming distance?
  5. 5 Statistical distance correction
  6. 6 Inferring a tree from additive distances (the naive quartet approach)
  7. 7 Practical methods
  8. 8 Remarkably strong asymptotic theoretical results
  9. 9 Phylogenetic Placement (PP)
  10. 10 Application: ecological sample identification (e.g., microbiome)
  11. 11 Sample identification using genome skimming
  12. 12 Two-step summary methods
  13. 13 Deep Learning for Phylogenetic Placement (DEPP)
  14. 14 Food for thought
  15. 15 Questions?

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