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Bioinformatics part 6 BLAST algorithm
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Classroom Contents
Bioinformatics With Practical
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- 1 Bioinformatics part 1 What is Bioinformatics
- 2 Bioinformatics part 2 Databases (protein and nucleotide)
- 3 Bioinformatics part 3 Sequence alignment introduction
- 4 Bioinformatics part 4 Introduction to FASTA and BLAST
- 5 Bioinformatics part 5 FASTA algorithm
- 6 Bioinformatics part 6 BLAST algorithm
- 7 Bioinformatics part 7 How to perform Global alignment 1
- 8 Bioinformatics part 8 How to perform Global alignment 2
- 9 Bioinformatics part 9 how to align sequences using trace back method
- 10 Bioinformatics part 10 How to perform local alignment
- 11 Bioinformatics part 11 Sequence motifs and PROSITE notations
- 12 Bioinformatics part 12 secondary structure prediction using Chou Fasman method
- 13 Bioinformatics part 13 how to calculate the propensity value
- 14 Bioinformatics par 14: Dot plot
- 15 Bioinformatics par 15 pairwise alignment
- 16 Bioinformatics part 16 evolution of bioinformatics tools
- 17 Bioinformatics part 17 homolog analog xenolog
- 18 Bioinformatics practical introduction
- 19 Bioinformatics Practical 1 database searching and retrival of sequence
- 20 Bioinformatics practical 2 how to run NCBI BLAST
- 21 Bioinformatics prac 3 Conserved domain search
- 22 Bioinformatics practical 4 multiple sequence alignment using ClustalW
- 23 Bioinformatics practical 5 Phylogenetic tree construction
- 24 Bioinformatics practical 6 Phylogenetic tree construction using MABL
- 25 Bioinformatics practical 7 Secondary structure prediction of proteins using SIB
- 26 Bioinformatics practical 7 secondary structure prediction 2
- 27 Bioinformatics practical 8 retrieving sequence fom Protein data bank
- 28 Bioinformatics practical 21 how to find transmembrane region in protein sequence
- 29 Bioinformatics practical 24 how to use PROSITESCAN
- 30 Bioinformatics practical 23 motif scan tool to identify known domains in protein sequence
- 31 Bioinformatics practical 22 how to search for known domains in protein sequence
- 32 Bioinformatics course 20 how to know the physicochemical properties of a protein
- 33 Bioinformatics practical 19 how to make a restriction map
- 34 Bioinformatics practical 18 how to predict translation product of a gene sequence?
- 35 Bioinformatics lecture 17 primer dimer check (bioinformatics practical)
- 36 Bioinformatics lecture 16 primer design
- 37 Bioinformatics lecture 15 how to screen vector contamination using vecscreen
- 38 Bioinformatics lecture 14 how to calculate % GC content and molecular weight of a gene
- 39 Bioinformatics lecture 12 ORF finder in NCBI (practical bioinformatics)
- 40 Bioinformatics lecture 11 gene centric databases (practical bioinformatics)
- 41 Bioinformatics lecture 10 whole genome database (practical bioinformatics)
- 42 Bioinformatics lecture 9 working with eukaryotic DNA (practical bioinformatics)
