DNAssim: A Full System Simulator for DNA Data Storage

DNAssim: A Full System Simulator for DNA Data Storage

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Noise Model

13 of 21

13 of 21

Noise Model

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DNAssim: A Full System Simulator for DNA Data Storage

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  1. 1 Intro
  2. 2 Outline
  3. 3 Why DNA?
  4. 4 DNA issues
  5. 5 DNA storage
  6. 6 Information Channel example
  7. 7 Edit distance: example
  8. 8 Evaluating the edit distance
  9. 9 Wagner Fischer algorithm: cell evaluation
  10. 10 Examples of IDS errors not being additive
  11. 11 Why a simulator?
  12. 12 Introducing sim (DNAssim)
  13. 13 Noise Model
  14. 14 Simulation tool
  15. 15 Comparing results
  16. 16 HW/SW co-simulation
  17. 17 HW acceleration: block diagram
  18. 18 HW acceleration: parallelism
  19. 19 SW Driver design
  20. 20 FPGA utilization
  21. 21 Conclusions

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