MD Simulations and Machine Learning to Quantify Interfacial Hydrophobicity

MD Simulations and Machine Learning to Quantify Interfacial Hydrophobicity

Applied Algebraic Topology Network via YouTube Direct link

Acknowledgements

13 of 13

13 of 13

Acknowledgements

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Classroom Contents

MD Simulations and Machine Learning to Quantify Interfacial Hydrophobicity

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  1. 1 Intro
  2. 2 Combining Molecular Dynamics Simulations and Learning to Quantify Interfacial Hydrophobic
  3. 3 Motivation: Hydrophobicity of idealized and real interfaces
  4. 4 Hydration free energy of cavity as descriptor of hydrophobicity
  5. 5 Density matrices - orientation information
  6. 6 Density matrices-performance compariso
  7. 7 Hydrogen bond graphs
  8. 8 Topological data analysis
  9. 9 Euler Characteristic is stable
  10. 10 Human-selected water order parameters
  11. 11 Feature selection with LASSO regression
  12. 12 Analysis of important features
  13. 13 Acknowledgements

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