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mDBG and Alignment: The Tumultuous Fate of Sequence Bioinformatics Ideas
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- 1 Introduction
- 2 Outline
- 3 Context
- 4 Assembly
- 5 Minimizers
- 6 Minimizer Alphabet
- 7 Minimizer Deployments
- 8 Pan Genomics
- 9 Equalized genomes
- 10 Behind the Scenes
- 11 The Three Methods
- 12 Backstory
- 13 First Prototype
- 14 Takeaways
- 15 Future of mDBG
- 16 Brewing graphs
- 17 Questions
- 18 WFA
- 19 Recap
- 20 Benefits
- 21 History
- 22 Alignment Tools
- 23 Why is WFA not Incorporated
- 24 Mapping fast without Alignment
- 25 Open problems
- 26 Mapping vs Alignment
