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16S Lab protocols
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Classroom Contents
QIIME 2 Cancer Microbiome Intervention Tutorial
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- 1 Introduction to the QIIME 2 Cancer Microbiome Intervention video tutorial
- 2 An introduction to QIIME 2
- 3 Running QIIME 2 inside Galaxy (alpha release version)
- 4 QIIME 2 Galaxy introduction
- 5 Semantic types and data formats in QIIME 2
- 6 Introduction to the Cancer Microbiome Intervention Tutorial data
- 7 Sample Metadata
- 8 Exploring the tutorial metadata
- 9 Importing and demultiplexing
- 10 16S Lab protocols
- 11 Importing demultiplexed sequence data
- 12 Denoising
- 13 Denoising sequence data with DADA2
- 14 Filtering feature tables
- 15 Taxonomic assignment
- 16 Taxonomic annotation of observed sequences
- 17 Phylogenetic reconstruction
- 18 Phylogenetic tree construction
- 19 Rarefaction
- 20 Identifying an even sampling depth
- 21 Computing diversity metrics
- 22 Alpha diversity metrics
- 23 Alpha diversity visualizations
- 24 Beta diversity metrics
- 25 Beta diversity visualizations
- 26 Longitudinal analyses
- 27 Longitudinal microbiome analysis
- 28 Sample classification
