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Neural Optimal Transport for Inferring Single-Cell Responses to Perturbations
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- 1 Introduction
- 2 How do cells change between different states
- 3 What determines cell transitions
- 4 Identifying regulators of cell transitions
- 5 Experimental methods
- 6 Single cell genomics
- 7 Types of perturbations
- 8 Abstract cell state space
- 9 Linear regression
- 10 Intuition
- 11 Nonlinearity
- 12 Perturbation Myth
- 13 Errors
- 14 Connection to networks
- 15 Parallel efforts
- 16 Gene expression programs
- 17 Major pitfalls
- 18 Overfitting
- 19 Cell Types
- 20 Validation
- 21 Predictability
- 22 Transfer Learning
- 23 genomoid screens
- 24 Neural optimal transport
