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Hashing, BLAST, Inexact Matching, PSI-BLAST
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Classroom Contents
Sequence Alignment and Dynamic Programming in Computational Biology - Lecture 4
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- 1 Intro: Aligning Sequential Datasets/Models
- 2 Comparative Genomics & Evolution
- 3 Computation Re-use, Dynamic Programming
- 4 Dynamic Programming Principles and Fibonacci
- 5 Alignment Matrix, Paths, Traceback, 2^N-vs-N^2
- 6 Local Alignment, Linear-Time, Linear Space
- 7 Hashing, BLAST, Inexact Matching, PSI-BLAST
