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Modeling Molecular Processes in Cell: Introduction
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Classroom Contents
Introduction to Dynamical Models in Biology
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- 1 Mathematical modeling in biology
- 2 How to Start Modeling
- 3 Modeling the spread of infectious disease
- 4 Modeling population growth
- 5 Numerical solution of ODE 1
- 6 Numerical solution of ODE 2
- 7 Simulating ODE-based models:Introduction to JSim
- 8 Simulating ODE-based models:Examples of simulation in JSim
- 9 Steady state and stability analysis:Understanding Steady State
- 10 Steady state and stability analysis:Stability of Steady States
- 11 Phase Plane Analysis-I
- 12 Phase Plane Analysis-II
- 13 Concepts of Bifurcation: Introduction
- 14 Concepts of Bifurcation: Bifurcation in Biological Systems
- 15 Modeling Molecular Processes in Cell: Introduction
- 16 Modeling Molecular Processes in Cell: Receptor-Ligand Interaction
- 17 Modeling Molecular Processes in Cell:Enzymatic Processes
- 18 Modeling Molecular Processes in Cell:Transcription and Translation
- 19 Modeling Cell Signaling:Negative Feedback Motif
- 20 Modeling Cell Signaling:Positive Feedback Motif
- 21 Modeling Cell Signaling:Incoherent Feedforward Motif
- 22 Modeling Transcriptional Circuits-1
- 23 Modeling Transcriptional Circuits-2
- 24 Online Resources for Mathematical Modeling in Biology
