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Basics of Phylogenetics - How to calculate evolutionary distance
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Classroom Contents
Introduction to Bioinformatics
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- 1 Introduction to Bioinformatics - definition and history (Lecture 1)
- 2 Introduction to Bioinformatics - Importance of informatics in biology (Lecture 2)
- 3 Introduction to Bioinformatics - Human Genome Project (Lecture 3)
- 4 Introduction to Bioinformatics - Mouse Genome (Lecture 4)
- 5 Introduction to Bioinformatics - Synteny between Human Mouse and Fish Genomes (Lecture 5)
- 6 Introduction to Bioinformatics - Why database is important in biology ? Lecture 6
- 7 Introduction to Bioinformatics - Primary and Secondary Databases (Lecture 7)
- 8 Introduction to Bioinformatics - Structure and Function Databases (Lecture 8)
- 9 Introduction to Bioinformatics - Sequence Conservation and Analysis (lecture 9)
- 10 Introduction to Bioinformatics - Regular Expression (Lecture 10)
- 11 Introduction to Bioinformatics - Needleman Wunsch Algorithm
- 12 Introduction to Bioinformatics - Needleman Wunsch algorithm - Part 1 (Lecture 11)
- 13 Introduction to Bioinformatics - Needleman Wunsch algorithm - Part 2 (Lecture 11)
- 14 Introduction to Bioinformatics - Needleman Wunsch algorithm - Part 3 (Lecture 11)
- 15 Introduction to Bioinformatics - Needleman Wunsch algorithm Traceback - Part 4 (Lecture 11)
- 16 PAM and BLOSUM substitution matrices - Concepts
- 17 Finding Repeated Matches - Pairwise Alignment using BLOSUM Substitution Matrix
- 18 Overlap Matches using pairwise alignment algorithm (Part 1)
- 19 Overlap Matches using pairwise alignment algorithm (Part 2)
- 20 Hidden Markov Model in Bioinformatics - HMM (Part 1)
- 21 Hidden Markov Model in Bioinformatics (Part 2)
- 22 Basics of Phylogenetics - Significance of Root in a tree
- 23 Basics of Phylogenetics - Tree Taxonomy
- 24 Basics of Phylogenetics - Difference between distance and character based methods
- 25 Basics of Phylogenetics - How to calculate evolutionary distance
- 26 Basics of Phylogenetics - How UPGMA and Neighbor Joining trees are generated?
- 27 Multiple Sequence Alignment and Phylogenetic Tree Building using MEGA Software - Tutorial
- 28 Basics of Phylogenetics - Understanding the nomenclature and types of phylogenetic tree.
- 29 Basics of Phylogenetics - Gene duplication and Speciation
- 30 Phylogenetic Tree Topology - Gene species tree reconciliation
- 31 Local Alignment (Smith Waterman)
- 32 SmithWaterman Algorithm (Local Alignment) Part 1 Urdu Version
- 33 SmithWaterman Algorithm (Local Alignment) Part 2 Urdu Version
