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How to Manipulate Gene Expression Data from NCBI GEO in R Using Dplyr - Bioinformatics for Beginners

How to Manipulate Gene Expression Data from NCBI GEO in R Using Dplyr - Bioinformatics for Beginners

bioinformagician via YouTube Direct link

dplyr: select, rename, mutate

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dplyr: select, rename, mutate

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How to Manipulate Gene Expression Data from NCBI GEO in R Using Dplyr - Bioinformatics for Beginners

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  1. 1 Intro
  2. 2 Requirements
  3. 3 Set up RStudio for Analysis
  4. 4 Read data in R
  5. 5 Get metadata using GEOquery package
  6. 6 dplyr: select, rename, mutate
  7. 7 Reshape data: gather
  8. 8 Join data: left_join
  9. 9 dplyr: filter, group_by, summarize, arrange

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