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Lineage tracing using autoencoders and optimal transport
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Classroom Contents
From Causal Inference to Autoencoders, Memorization & Gene Regulation - Caroline Uhler, MIT
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- 1 Intro
- 2 Motivation: From single-cell measurements to mechanisms
- 3 Overview
- 4 Structural equation models
- 5 Markov equivalence classes on 3 nodes
- 6 Interventional Markov equivalence class
- 7 Causal inference and genomics
- 8 Multidomain translation & integration using autoencoders
- 9 Lineage tracing using autoencoders and optimal transport
- 10 Memorization in autoencoders
- 11 Single-layer fully connected autoencoders
- 12 Memorization of training images by iteration
- 13 Different interpolating solutions for autoencoders
- 14 Memorization: Storing and retrieving images
- 15 Memorization: Storing and retrieving sequences
- 16 Conclusions
