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The Zymergen approach
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Classroom Contents
Designing 1000 Genomes in a Single Bound - The Codon DSL
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- 1 Intro
- 2 Talk Outline
- 3 Industrial fermentation: nature's chemical plant
- 4 The total design space for biology is enormous
- 5 The Zymergen approach
- 6 Microbial engineering: Building DNA
- 7 Microbial engineering: Building microbes
- 8 Testing microbes
- 9 Custom software requirements
- 10 Software for DNA Search: Our problem
- 11 Our solution: Codon
- 12 DNA Data Model
- 13 DNA is annotated
- 14 DnaSpecification Example
- 15 Promoter swapping
- 16 DnaSpecifications are ASTS
- 17 ASTs let us preprocess structure
- 18 How'd we do?
- 19 The "Code trust" problem
- 20 Lessons from Code trust
- 21 The Simplified interface problem
- 22 Lessons from "Simplified interface"
- 23 The "Learning curve" problem
- 24 Lessons from "The learning curve"
- 25 The Super User problem
- 26 Lessons from "super users"
- 27 Conclusions
