Calcium Imaging Data Cell Extraction

Calcium Imaging Data Cell Extraction

MITCBMM via YouTube Direct link

ROI analysis

6 of 16

6 of 16

ROI analysis

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Classroom Contents

Calcium Imaging Data Cell Extraction

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  1. 1 Install CNMF-E
  2. 2 Outline
  3. 3 Calcium Imaging
  4. 4 Cell Extraction Problem
  5. 5 Two Approaches
  6. 6 ROI analysis
  7. 7 Matrix Factorization Approach
  8. 8 CNMF framework
  9. 9 Microendoscope
  10. 10 Microendoscopic Data
  11. 11 Model of the background
  12. 12 Three subproblems
  13. 13 Optimization problem
  14. 14 Interventions
  15. 15 Initialization
  16. 16 Pipeline

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