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Intro
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Classroom Contents
Building a Unified Cancer Immunotherapy Data Library
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- 1 Intro
- 2 CANDEL: The CANcer Data & Evidence Library
- 3 The Parker Institute Network
- 4 History of Cancer Treatment
- 5 Types Of Immunotherapy
- 6 What does the data scientist's job look like?
- 7 Physically and conceptually fragmented data
- 8 Design requirements
- 9 Talk outline
- 10 Datomic: Getting the Data Right
- 11 Datomic: Getting More Realistic
- 12 Better Aspects of Both Worlds
- 13 Getting Data into Datomic
- 14 Metamodel (Schema Annotations as Data)
- 15 Config Structure Derived from Metamodel and Schema
- 16 Import Validation
- 17 pret Command Line Workflow
- 18 The CANDEL Schema
- 19 The PRINCE clinical trial in Pancreatic Cancer
- 20 Importing the PRINCE dataset into CANDEL with pret
- 21 Steps of a data import
- 22 The end result of data import
- 23 Datomic Query via R: Tool Support
- 24 Datomic Query in Raw EDN
- 25 Spec Parser for Datalog over Plain JSON
- 26 Query Comparison
- 27 Enabling downstream applications
- 28 Plotting and standard analyses enabled by CANDEL
- 29 Circulating Tumor DNA: Mutant KRAS
- 30 CANDEL enables faster progress in cancer immunotherapy research
