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BERTology Meets Biology - Interpreting Attention in Protein Language Models

BERTology Meets Biology - Interpreting Attention in Protein Language Models

Yannic Kilcher via YouTube Direct link

- BERT for Amino Acid Sequences

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- BERT for Amino Acid Sequences

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Classroom Contents

BERTology Meets Biology - Interpreting Attention in Protein Language Models

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  1. 1 - Intro & Overview
  2. 2 - From DNA to Proteins
  3. 3 - BERT for Amino Acid Sequences
  4. 4 - The Structure of Proteins
  5. 5 - Investigating Biological Properties by Inspecting BERT
  6. 6 - Amino Acid Substitution
  7. 7 - Contact Maps
  8. 8 - Binding Sites
  9. 9 - Linear Probes
  10. 10 - Conclusion & Comments

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